KRA–KPA Reforms Target Faster Clearance, Digital Integration at Mombasa Port

Kenya Revenue Authority (KRA), in collaboration with the Kenya Ports Authority (KPA) and key port stakeholders, has rolled out joint reforms aimed at decongesting the Port of Mombasa, reducing cargo dwell time, and accelerating clearance through a technology-driven and results-oriented approach.

Speaking during the announcement of the reforms, Mr. Wattanga said the measures mark a strategic shift towards a more predictable, efficient, and digitally enabled port ecosystem that supports trade facilitation and economic growth.

“The Port of Mombasa is not only a national asset but a critical regional gateway. Our objective is to eliminate bottlenecks, reduce cargo dwell time, and build a predictable, efficient, and digitally enabled clearance system that supports trade and economic growth,” he said.

Capt. Ruto reaffirmed KPA’s commitment to implementing the agreed-upon measures in close partnership with KRA and industry stakeholders, noting that port efficiency is a shared responsibility.

“These reforms will unlock capacity, improve operational flow and strengthen Mombasa’s competitiveness as a regional and global port. KPA will dedicate the necessary infrastructure and resources to ensure their successful implementation,” he said.

As an urgent intervention to ease congestion, stakeholders resolved that all long-stay consignments earmarked for auction or destruction will be transferred to designated Container Freight Stations, beginning with cargo that has remained at the port beyond 21 days. The evacuation exercise will start at the G-section of the port and is expected to rapidly free up critical yard space, easing congestion and improving operational flow.

To further accelerate clearance, KRA will expand the Pre-Arrival Processing framework, with priority given to bulk cargo, low-risk shipments, and Authorized Economic Operator consignments. The enhanced system will allow cargo to be processed before arrival, significantly reducing clearance times, improving predictability, and minimising delays.

To address persistent shortages of Regional Electronic Cargo Tracking System (RECTS) seals, KRA will introduce a multi-vendor model through an open expression of interest process.

In addition, KRA and KPA will engage the Kenya Railways Corporation to deploy additional wagons on the Standard Gauge Railway (SGR), accelerating the transfer of cargo to the Embakasi and Naivasha Inland Container Depots. This is expected to reduce pressure on the port and key road corridors while improving cargo evacuation timelines.

Stakeholders also agreed to increase the utilisation of Lamu Port for transhipment cargo to ease pressure on Kilindini and unlock the full potential of Kenya’s northern maritime gateway. KPA has committed to dedicating adequate infrastructure and operational resources to support transhipment activities at Lamu.

To address inefficiencies in the handling of empty containers, KPA has allocated a dedicated site within the port for stacking and loading empty units. A new industry framework on empty container management will take effect from 26th January, 2026, and is expected to improve coordination and turnaround times.

The reforms will be supported by deeper digital systems integration to eliminate multiple documentation requirements, reduce manual processes, and enhance operational efficiency. KRA will also deploy additional personnel at RECTS offices and port gates to speed up cargo arming and exit processes, delivering immediate gains in output and service quality.

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